nghiaagentrutils

I set up this packages to contain my frequently used functions:

• recode_msigdbh: Make MSigDB Hallmark gene set names more readable.

Installation

You can install the development version of nghiaagentrutils from GitHub with:

# install.packages("pak")
# pak::pak("nghiaagent/nghiaagentrutils")
install.packages("nghiaagentrutils", repos = c('https://nghiaagent.r-universe.dev', 'https://cloud.r-project.org'))

Examples

Making MSigDB Hallmark gene set names more readable

Supply the recode_msigdbh() function with your vector of MSigDB Hallmark gene set names.

Ensure the gene set names are derived from the publicly available GMT files at https://www.gsea-msigdb.org/gsea/msigdb

## Example
x <- c(
  "HALLMARK_ADIPOGENESIS",
  "HALLMARK_G2M_CHECKPOINT",
  "HALLMARK_IL6_JAK_STAT3_SIGNALING"
)
recode_msigdbh(x)
#> [1] "Adipogenesis"             "G2/M checkpoint"         
#> [3] "IL-6/JAK/STAT3 signaling"